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    Structured Review

    Addgene inc control vector
    Control Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 94/100, based on 55 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/control vector/product/Addgene inc
    Average 94 stars, based on 55 article reviews
    control vector - by Bioz Stars, 2026-03
    94/100 stars

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    (A) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human renal proximal tubule epithelial cells (RPTECs) cultured with vehicle or cyclosporin A (CsA) for 24 h (n = 6 per group). (B) Western blot of p21 WAF1/Cip1 and actin in primary human RPTECs cultured with DMSO or CsA for 5 days. (C and D) Flow cytometric assay for quantification of senescence-associated β-galactosidase activity in primary human RPTECs cultured with DMSO, CsA or doxorubicin for 24 h (C). Mean fluorescence intensity is plotted in (D). RPTECs cultured with doxorubicin were used as a positive control. (E) Western blot of PDP1, PDHA1 phosphorylation at Ser293, total PDHA1 and actin in primary human RPTECs transduced with <t>lentiviral</t> vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 12 h. PDHA1, pyruvate dehydrogenase E1 subunit alpha 1; PDP1, pyruvate dehydrogenase phosphatase 1. (F and G) Oxygen consumption rate (OCR) normalized to total protein levels in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (F). Maximum mitochondrial respiration is calculated and plotted in (G). n = 15 per group. (H) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (n = 3 per group). (I) Schematic illustration of proposed mechanism of chronic calcineurin inhibitor nephrotoxicity. Inhibition of calcineurin causes deactivation of pyruvate dehydrogenase. This results in a decreased flux of TCA cycle metabolites and decreased mitochondrial respiration. Cellular metabolic dysfunction causes proinflammatory, profibrotic phenotypes associated with cellular senescence and induce kidney fibrosis. Data are presented as mean ± 1.96 SE (A, F and H) or mean ± SD (D and G). Unpaired two-tailed Welch’s t test was used. Holm’s correction for multiple comparisons was used in (G and H). n represents the number of biological replicates. * p < 0.05, ** p < 0.01, *** p < 0.001. n.s., not significant. See also Figure S4.
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    Control Vector 50459 Aav5 Addgene Watertown Ma, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    (A) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human renal proximal tubule epithelial cells (RPTECs) cultured with vehicle or cyclosporin A (CsA) for 24 h (n = 6 per group). (B) Western blot of p21 WAF1/Cip1 and actin in primary human RPTECs cultured with DMSO or CsA for 5 days. (C and D) Flow cytometric assay for quantification of senescence-associated β-galactosidase activity in primary human RPTECs cultured with DMSO, CsA or doxorubicin for 24 h (C). Mean fluorescence intensity is plotted in (D). RPTECs cultured with doxorubicin were used as a positive control. (E) Western blot of PDP1, PDHA1 phosphorylation at Ser293, total PDHA1 and actin in primary human RPTECs transduced with <t>lentiviral</t> vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 12 h. PDHA1, pyruvate dehydrogenase E1 subunit alpha 1; PDP1, pyruvate dehydrogenase phosphatase 1. (F and G) Oxygen consumption rate (OCR) normalized to total protein levels in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (F). Maximum mitochondrial respiration is calculated and plotted in (G). n = 15 per group. (H) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (n = 3 per group). (I) Schematic illustration of proposed mechanism of chronic calcineurin inhibitor nephrotoxicity. Inhibition of calcineurin causes deactivation of pyruvate dehydrogenase. This results in a decreased flux of TCA cycle metabolites and decreased mitochondrial respiration. Cellular metabolic dysfunction causes proinflammatory, profibrotic phenotypes associated with cellular senescence and induce kidney fibrosis. Data are presented as mean ± 1.96 SE (A, F and H) or mean ± SD (D and G). Unpaired two-tailed Welch’s t test was used. Holm’s correction for multiple comparisons was used in (G and H). n represents the number of biological replicates. * p < 0.05, ** p < 0.01, *** p < 0.001. n.s., not significant. See also Figure S4.
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    Addgene inc control vector aav8 hsyn mcherry
    (A) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human renal proximal tubule epithelial cells (RPTECs) cultured with vehicle or cyclosporin A (CsA) for 24 h (n = 6 per group). (B) Western blot of p21 WAF1/Cip1 and actin in primary human RPTECs cultured with DMSO or CsA for 5 days. (C and D) Flow cytometric assay for quantification of senescence-associated β-galactosidase activity in primary human RPTECs cultured with DMSO, CsA or doxorubicin for 24 h (C). Mean fluorescence intensity is plotted in (D). RPTECs cultured with doxorubicin were used as a positive control. (E) Western blot of PDP1, PDHA1 phosphorylation at Ser293, total PDHA1 and actin in primary human RPTECs transduced with <t>lentiviral</t> vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 12 h. PDHA1, pyruvate dehydrogenase E1 subunit alpha 1; PDP1, pyruvate dehydrogenase phosphatase 1. (F and G) Oxygen consumption rate (OCR) normalized to total protein levels in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (F). Maximum mitochondrial respiration is calculated and plotted in (G). n = 15 per group. (H) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (n = 3 per group). (I) Schematic illustration of proposed mechanism of chronic calcineurin inhibitor nephrotoxicity. Inhibition of calcineurin causes deactivation of pyruvate dehydrogenase. This results in a decreased flux of TCA cycle metabolites and decreased mitochondrial respiration. Cellular metabolic dysfunction causes proinflammatory, profibrotic phenotypes associated with cellular senescence and induce kidney fibrosis. Data are presented as mean ± 1.96 SE (A, F and H) or mean ± SD (D and G). Unpaired two-tailed Welch’s t test was used. Holm’s correction for multiple comparisons was used in (G and H). n represents the number of biological replicates. * p < 0.05, ** p < 0.01, *** p < 0.001. n.s., not significant. See also Figure S4.
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    (A) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human renal proximal tubule epithelial cells (RPTECs) cultured with vehicle or cyclosporin A (CsA) for 24 h (n = 6 per group). (B) Western blot of p21 WAF1/Cip1 and actin in primary human RPTECs cultured with DMSO or CsA for 5 days. (C and D) Flow cytometric assay for quantification of senescence-associated β-galactosidase activity in primary human RPTECs cultured with DMSO, CsA or doxorubicin for 24 h (C). Mean fluorescence intensity is plotted in (D). RPTECs cultured with doxorubicin were used as a positive control. (E) Western blot of PDP1, PDHA1 phosphorylation at Ser293, total PDHA1 and actin in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 12 h. PDHA1, pyruvate dehydrogenase E1 subunit alpha 1; PDP1, pyruvate dehydrogenase phosphatase 1. (F and G) Oxygen consumption rate (OCR) normalized to total protein levels in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (F). Maximum mitochondrial respiration is calculated and plotted in (G). n = 15 per group. (H) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (n = 3 per group). (I) Schematic illustration of proposed mechanism of chronic calcineurin inhibitor nephrotoxicity. Inhibition of calcineurin causes deactivation of pyruvate dehydrogenase. This results in a decreased flux of TCA cycle metabolites and decreased mitochondrial respiration. Cellular metabolic dysfunction causes proinflammatory, profibrotic phenotypes associated with cellular senescence and induce kidney fibrosis. Data are presented as mean ± 1.96 SE (A, F and H) or mean ± SD (D and G). Unpaired two-tailed Welch’s t test was used. Holm’s correction for multiple comparisons was used in (G and H). n represents the number of biological replicates. * p < 0.05, ** p < 0.01, *** p < 0.001. n.s., not significant. See also Figure S4.

    Journal: bioRxiv

    Article Title: Calcineurin inhibition deactivates pyruvate dehydrogenase and induces proximal tubule cell metabolic dysfunction, causing profibrotic phenotype

    doi: 10.1101/2024.11.20.624584

    Figure Lengend Snippet: (A) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human renal proximal tubule epithelial cells (RPTECs) cultured with vehicle or cyclosporin A (CsA) for 24 h (n = 6 per group). (B) Western blot of p21 WAF1/Cip1 and actin in primary human RPTECs cultured with DMSO or CsA for 5 days. (C and D) Flow cytometric assay for quantification of senescence-associated β-galactosidase activity in primary human RPTECs cultured with DMSO, CsA or doxorubicin for 24 h (C). Mean fluorescence intensity is plotted in (D). RPTECs cultured with doxorubicin were used as a positive control. (E) Western blot of PDP1, PDHA1 phosphorylation at Ser293, total PDHA1 and actin in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 12 h. PDHA1, pyruvate dehydrogenase E1 subunit alpha 1; PDP1, pyruvate dehydrogenase phosphatase 1. (F and G) Oxygen consumption rate (OCR) normalized to total protein levels in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (F). Maximum mitochondrial respiration is calculated and plotted in (G). n = 15 per group. (H) mRNA expression of genes associated with cellular senescence measured by quantitative PCR in primary human RPTECs transduced with lentiviral vectors encoding the gene of either a control protein (mCherry) or PDP1 and cultured with DMSO or CsA for 24 h (n = 3 per group). (I) Schematic illustration of proposed mechanism of chronic calcineurin inhibitor nephrotoxicity. Inhibition of calcineurin causes deactivation of pyruvate dehydrogenase. This results in a decreased flux of TCA cycle metabolites and decreased mitochondrial respiration. Cellular metabolic dysfunction causes proinflammatory, profibrotic phenotypes associated with cellular senescence and induce kidney fibrosis. Data are presented as mean ± 1.96 SE (A, F and H) or mean ± SD (D and G). Unpaired two-tailed Welch’s t test was used. Holm’s correction for multiple comparisons was used in (G and H). n represents the number of biological replicates. * p < 0.05, ** p < 0.01, *** p < 0.001. n.s., not significant. See also Figure S4.

    Article Snippet: Lentiviral vectors that encoded PDP1 or a control protein (mCherry) were purchased from VectorBuilder Japan (Kanagawa, Japan).

    Techniques: Expressing, Real-time Polymerase Chain Reaction, Cell Culture, Western Blot, Flow Cytometry, Activity Assay, Fluorescence, Positive Control, Transduction, Control, Inhibition, Two Tailed Test